Can you store your gases in cylinders after they're separated? That way you can have whatever flow rate you need out of the tanks, on demand. It
seems like you're planning to run it 24/7 or something, but the stuff you're planning to build it out of doesn't seem anywhere near reliable enough
for continuous production.
An ordinary air filter similar to a car's, combined with an inline desiccator should work fine. Perhaps a carbon filter as a final stage.
Incidentally, silica gel is the desiccator you want. Silicone gel is just a soft, rubbery polymer.
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