I've used 10% bleach soaking on a few mystery deposits I didn't want to, or couldn't, get close to.
A few days in a bucket of bleach will eat most things organic.
Or stop up all the apparatus' joints and just fill it (leave a vent hole or loose stopper on top.)
I do try solvents and acid of some sort first, but this is a last resort short of piranha, and fairly cheap to buy at pool supply stores.
But the odds of it being all that dangerous are low.
I'd probably just scrub that out in the garage sink with gloves and wash up after.
I've dealt with a lot of brown to black mystery deposits in used glassware over the years, and I still haven't developed any super powers.
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