Sciencemadness Discussion Board
Not logged in [Login ]
Go To Bottom

Printable Version  
Author: Subject: Poison PDF in Library
oofy
Harmless
*




Posts: 4
Registered: 18-5-2011
Member Is Offline

Mood: No Mood

[*] posted on 18-5-2011 at 13:03
Poison PDF in Library


The PDF for Gergel--Isopropyl Bromide in the library is poisoned to the point where I have to reboot my OS X Mac or my iPad (1) if I try to open it. This is a very bad crash. I have tried running it through pdftk with no success. It is the first PDF I have ever had this problem with. I see that it was created with ABBYY Finereader. I wonder if someone could possibly re-encode this PDF with a later version or more compatibility options so that it doesn't irretrievably crash on a Mac or iPad.

I'm looking forward to reading it. Thanks.

[Edited on 18-5-2011 by oofy]
View user's profile View All Posts By User
Polverone
Now celebrating 21 years of madness
*********




Posts: 3186
Registered: 19-5-2002
Location: The Sunny Pacific Northwest
Member Is Offline

Mood: Waiting for spring

[*] posted on 18-5-2011 at 14:59


The MD5 checksum for the file is f019e2722bd64684e2093a0933e390f4. Ensure that it has downloaded cleanly.

If you have to reboot OS X to recover from a PDF problem I think that there is something wrong with your hardware. I don't have a Mac myself but I have successfully viewed this PDF using Adobe Acrobat 9, evince, and xpdf under Windows and Linux.




PGP Key and corresponding e-mail address
View user's profile Visit user's homepage View All Posts By User
oofy
Harmless
*




Posts: 4
Registered: 18-5-2011
Member Is Offline

Mood: No Mood

[*] posted on 18-5-2011 at 16:39


I have redownloaded it several times. I have tried it on three different OS X machines (and my iPad, which runs IOS, not OS X).

In both cases (IOS and OS X) the machines lock up because of excessive resource usage and have to be rebooted. This is extremely rare for OS X and unheard of on an iPad.

I have tried a variety of PDF software for both platforms with the same result.

It seems reasonable to assume that there is a Postscript bug in the PDF file that is creating a loop that uses up all of the available resources of the various machines. Postscript from the PDF itself is the only executable code common to all these environments.

**EDIT** the MD5 matches. I just checked it. The file is downloaded correctly. I would simply install Acrobat Professional and re-encode the file myself, except that I am on a boat at sea and it is therefore inconvenient at the moment. And that would not solve the problem for the other Mac and iPad users out there.

[Edited on 19-5-2011 by oofy]
View user's profile View All Posts By User
Polverone
Now celebrating 21 years of madness
*********




Posts: 3186
Registered: 19-5-2002
Location: The Sunny Pacific Northwest
Member Is Offline

Mood: Waiting for spring

[*] posted on 18-5-2011 at 17:50


If there were an infinite loop in the file's Postscript code it should lock up all readers, just as an infinite loop in a web page's Javascript should cause problems on all web browsers. Yet I have viewed the book successfully with Adobe's Acrobat Reader 9 and two other less common PDF viewers. I have only 1 GB of RAM on my test machine, so I don't think it needs a lot of resources. You have tried to open the file under OS X with a recent version of Adobe Acrobat Reader, and it consumes so much RAM that the machine becomes unresponsive and needs rebooting?

I was successfully able to run operations on the file with pdftk 1.41. When you say you tried pdftk without success, do you mean that pdftk had problems processing the file or simply that the processed file emitted by pdftk still cannot be read on your machines?




PGP Key and corresponding e-mail address
View user's profile Visit user's homepage View All Posts By User
Sedit
International Hazard
*****




Posts: 1939
Registered: 23-11-2008
Member Is Offline

Mood: Manic Expressive

[*] posted on 18-5-2011 at 18:25


Can we link to the file? My computers a piece of shit so if I manage to open it I would be pretty sure its on your end.




Knowledge is useless to useless people...

"I see a lot of patterns in our behavior as a nation that parallel a lot of other historical processes. The fall of Rome, the fall of Germany — the fall of the ruling country, the people who think they can do whatever they want without anybody else's consent. I've seen this story before."~Maynard James Keenan
View user's profile View All Posts By User
oofy
Harmless
*




Posts: 4
Registered: 18-5-2011
Member Is Offline

Mood: No Mood

[*] posted on 19-5-2011 at 07:50


<a href=http://library.sciencemadness.org/library/books/gergel_isopropyl_bromide.pdf>Here is the file.</a>

Pdftk successfully reads the file, does whatever I tell it to do, and successfully writes the output file. No errors. But also no change in the crashing behaviour.

Acrobat Reader v8 displays the pdf on OS X (I tried that after my last posting--I did not have Acrobat readily available, did not really have the bandwidth to download it because it has become huge, and do not wish to use it). Nothing else can read the file. Preview chews on the file for a while, doesn't display anything, then goes unresponsive and requires a force-kill and reboot, if enough time has elapsed. Acrobat Reader won't let me makes changes or save or print the file to see if I can create something that doesn't crash all my other pdf readers on OS X or iPad.

I do not have the power available to read the entire book on my laptop in Acrobat (we're 100% solar around here). I can really only read it on my iPad. But that is peripheral to the fact that PDF is explicitly a cross-platform document format and this file crashes Preview and all other third-party Mac and iPad software. There is something wrong with it. Hopefully, pointing that out will help others who wish to read it with something other than Windows/Adobe. The question is: what is wrong with this file that Acrobat can tolerate but nothing else on Mac can?

I read hundreds of PDFs on my iPad every month. Not one of them has ever crashed, even once, since April 2010. There is nothing wrong at my end.

Thanks for the suggestions.
View user's profile View All Posts By User
Polverone
Now celebrating 21 years of madness
*********




Posts: 3186
Registered: 19-5-2002
Location: The Sunny Pacific Northwest
Member Is Offline

Mood: Waiting for spring

[*] posted on 19-5-2011 at 09:07


The file's page images are compressed with JBIG2, which is a little "exotic" by the standards of PDF. But it's been in fairly common use since 2003. There are two possibilities: 1) Preview and whatever reads PDF on the iPad do not handle JBIG2. 2) There is something specifically problematic about the Gergel file, not JBIG2 in general.

To cross-check, please try downloading/reading Ignition!, which was created by a similar process and is also encoded in JBIG2. If you have trouble with that too I guess the Apple-bundled applications don't handle JBIG2.




PGP Key and corresponding e-mail address
View user's profile Visit user's homepage View All Posts By User
Sedit
International Hazard
*****




Posts: 1939
Registered: 23-11-2008
Member Is Offline

Mood: Manic Expressive

[*] posted on 19-5-2011 at 09:11


It worked on both my computers no problem.




Knowledge is useless to useless people...

"I see a lot of patterns in our behavior as a nation that parallel a lot of other historical processes. The fall of Rome, the fall of Germany — the fall of the ruling country, the people who think they can do whatever they want without anybody else's consent. I've seen this story before."~Maynard James Keenan
View user's profile View All Posts By User
not_important
International Hazard
*****




Posts: 3873
Registered: 21-7-2006
Member Is Offline

Mood: No Mood

[*] posted on 19-5-2011 at 10:55


No problems here on several machines, *NIX and Win and OS X and Vista over OS X. Recent versions of Acrobat and Foxit Reader.

View user's profile View All Posts By User
oofy
Harmless
*




Posts: 4
Registered: 18-5-2011
Member Is Offline

Mood: No Mood

[*] posted on 20-5-2011 at 00:34


I downloaded Ignition! and it crashes and burns just like the Gergel file. JBIG2 appears to be the problem. Now to find out what the heck JBIG2 is. Thanks.

*EDIT* lots of reports out there of JBIG2 crashing Coregraphics with a heap overflow and many others report the same behaviour: excessive allocation of memory with eventual slowdown, crash etc. Funny that it affects both OS X and IOS, but apparently that is so.

I had someone convert the file to HTML and back to PDF and it resolves the crash, but the images are so poor that there is garbage scattered throughout the text, making it unreadable. It looks perfect until you try to read it, then you run across the garbage and get stuck. Must be OCR errors.

[Edited on 20-5-2011 by oofy]
View user's profile View All Posts By User
#maverick#
Hazard to Others
***




Posts: 209
Registered: 7-4-2011
Member Is Offline

Mood: hybridised

[*] posted on 20-5-2011 at 08:30


works on the shitty machines at school i believe its probably on your part
View user's profile View All Posts By User
mr.crow
National Hazard
****




Posts: 884
Registered: 9-9-2009
Location: Canada
Member Is Offline

Mood: 0xFF

[*] posted on 20-5-2011 at 11:15


I have had multiple PDFs from the reference section crash my Mac pdf viewer. I only use it because its my computer at work. Macs aren't all they are cracked up to be

Perhaps there are some alternative PDF viewers? I use one for windows. Adobe pdf is notorious




Double, double toil and trouble; Fire burn, and caldron bubble
View user's profile View All Posts By User
kmno4
International Hazard
*****




Posts: 1497
Registered: 1-6-2005
Location: Silly, stupid country
Member Is Offline

Mood: No Mood

[*] posted on 21-5-2011 at 03:04


IrfanView and gsview32 do not read at all JBIG2 compressed files, also this "poisoned" one.
I removed compression, try it:
http://ifile.it/z2jx0oe
Both viewers can read it now.

[Edited on 21-5-2011 by kmno4]
View user's profile View All Posts By User

  Go To Top